pyiron\_atomistics.lammps.interactive.LammpsInteractive
=======================================================

.. currentmodule:: pyiron_atomistics.lammps.interactive

.. autoclass:: LammpsInteractive
   :members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~LammpsInteractive.__init__
      ~LammpsInteractive.animate_structure
      ~LammpsInteractive.animate_structures
      ~LammpsInteractive.calc_md
      ~LammpsInteractive.calc_minimize
      ~LammpsInteractive.calc_static
      ~LammpsInteractive.calc_vcsgc
      ~LammpsInteractive.check_if_job_exists
      ~LammpsInteractive.check_setup
      ~LammpsInteractive.clear_bonds
      ~LammpsInteractive.clear_job
      ~LammpsInteractive.collect_logfiles
      ~LammpsInteractive.collect_output
      ~LammpsInteractive.collect_structures
      ~LammpsInteractive.compress
      ~LammpsInteractive.continue_with_final_structure
      ~LammpsInteractive.continue_with_restart_files
      ~LammpsInteractive.convergence_check
      ~LammpsInteractive.copy
      ~LammpsInteractive.copy_file_to_working_directory
      ~LammpsInteractive.copy_template
      ~LammpsInteractive.copy_to
      ~LammpsInteractive.create_job
      ~LammpsInteractive.create_pipeline
      ~LammpsInteractive.db_entry
      ~LammpsInteractive.decompress
      ~LammpsInteractive.define_bonds
      ~LammpsInteractive.drop_status_to_aborted
      ~LammpsInteractive.enable_h5md
      ~LammpsInteractive.from_dict
      ~LammpsInteractive.from_hdf
      ~LammpsInteractive.from_hdf_args
      ~LammpsInteractive.get
      ~LammpsInteractive.get_calculate_function
      ~LammpsInteractive.get_final_structure
      ~LammpsInteractive.get_from_table
      ~LammpsInteractive.get_input_parameter_dict
      ~LammpsInteractive.get_job_id
      ~LammpsInteractive.get_neighbors
      ~LammpsInteractive.get_neighbors_snapshots
      ~LammpsInteractive.get_output_parameter_dict
      ~LammpsInteractive.get_potentials_for_structure
      ~LammpsInteractive.get_structure
      ~LammpsInteractive.get_workdir_file
      ~LammpsInteractive.gui
      ~LammpsInteractive.inspect
      ~LammpsInteractive.instantiate
      ~LammpsInteractive.interactive_atom_spin_constraints_getter
      ~LammpsInteractive.interactive_atom_spins_getter
      ~LammpsInteractive.interactive_cell_organizer
      ~LammpsInteractive.interactive_cells_getter
      ~LammpsInteractive.interactive_cells_setter
      ~LammpsInteractive.interactive_close
      ~LammpsInteractive.interactive_collect
      ~LammpsInteractive.interactive_computation_time_getter
      ~LammpsInteractive.interactive_energy_pot_getter
      ~LammpsInteractive.interactive_energy_tot_getter
      ~LammpsInteractive.interactive_execute
      ~LammpsInteractive.interactive_fetch
      ~LammpsInteractive.interactive_flush
      ~LammpsInteractive.interactive_forces_getter
      ~LammpsInteractive.interactive_index_organizer
      ~LammpsInteractive.interactive_indices_getter
      ~LammpsInteractive.interactive_indices_setter
      ~LammpsInteractive.interactive_initialize_interface
      ~LammpsInteractive.interactive_is_activated
      ~LammpsInteractive.interactive_magmom_organizer
      ~LammpsInteractive.interactive_magnetic_forces_getter
      ~LammpsInteractive.interactive_open
      ~LammpsInteractive.interactive_positions_getter
      ~LammpsInteractive.interactive_positions_organizer
      ~LammpsInteractive.interactive_positions_setter
      ~LammpsInteractive.interactive_pressures_getter
      ~LammpsInteractive.interactive_spin_constraints_getter
      ~LammpsInteractive.interactive_spin_constraints_setter
      ~LammpsInteractive.interactive_spins_getter
      ~LammpsInteractive.interactive_steps_getter
      ~LammpsInteractive.interactive_store_in_cache
      ~LammpsInteractive.interactive_stress_getter
      ~LammpsInteractive.interactive_structure_setter
      ~LammpsInteractive.interactive_temperatures_getter
      ~LammpsInteractive.interactive_time_getter
      ~LammpsInteractive.interactive_unwrapped_positions_getter
      ~LammpsInteractive.interactive_volume_getter
      ~LammpsInteractive.is_compressed
      ~LammpsInteractive.is_master_id
      ~LammpsInteractive.is_self_archived
      ~LammpsInteractive.iter_structures
      ~LammpsInteractive.job_file_name
      ~LammpsInteractive.kill
      ~LammpsInteractive.list_all
      ~LammpsInteractive.list_childs
      ~LammpsInteractive.list_files
      ~LammpsInteractive.list_groups
      ~LammpsInteractive.list_nodes
      ~LammpsInteractive.list_potentials
      ~LammpsInteractive.load
      ~LammpsInteractive.map
      ~LammpsInteractive.move_to
      ~LammpsInteractive.next
      ~LammpsInteractive.read_restart_file
      ~LammpsInteractive.refresh_job_status
      ~LammpsInteractive.relocate_hdf5
      ~LammpsInteractive.remap_indices
      ~LammpsInteractive.remove
      ~LammpsInteractive.remove_and_reset_id
      ~LammpsInteractive.remove_child
      ~LammpsInteractive.rename
      ~LammpsInteractive.reset_job_id
      ~LammpsInteractive.restart
      ~LammpsInteractive.run
      ~LammpsInteractive.run_if_interactive
      ~LammpsInteractive.run_if_interactive_non_modal
      ~LammpsInteractive.run_if_modal
      ~LammpsInteractive.run_if_refresh
      ~LammpsInteractive.run_if_scheduler
      ~LammpsInteractive.run_static
      ~LammpsInteractive.run_time_to_db
      ~LammpsInteractive.save
      ~LammpsInteractive.save_output
      ~LammpsInteractive.self_archive
      ~LammpsInteractive.self_unarchive
      ~LammpsInteractive.set_fix_external
      ~LammpsInteractive.set_input_to_read_only
      ~LammpsInteractive.set_potential
      ~LammpsInteractive.show_hdf
      ~LammpsInteractive.signal_intercept
      ~LammpsInteractive.species_from_hdf
      ~LammpsInteractive.store_structure
      ~LammpsInteractive.suspend
      ~LammpsInteractive.to_dict
      ~LammpsInteractive.to_hdf
      ~LammpsInteractive.to_object
      ~LammpsInteractive.trajectory
      ~LammpsInteractive.transfer_from_remote
      ~LammpsInteractive.transform_structures
      ~LammpsInteractive.update_master
      ~LammpsInteractive.update_potential
      ~LammpsInteractive.validate_ready_to_run
      ~LammpsInteractive.view_potentials
      ~LammpsInteractive.view_structure
      ~LammpsInteractive.write_input
      ~LammpsInteractive.write_restart_file
      ~LammpsInteractive.write_traj
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~LammpsInteractive.bond_dict
      ~LammpsInteractive.calculate_kwargs
      ~LammpsInteractive.child_ids
      ~LammpsInteractive.content
      ~LammpsInteractive.current_structure
      ~LammpsInteractive.cutoff_radius
      ~LammpsInteractive.database_entry
      ~LammpsInteractive.exclude_groups_hdf
      ~LammpsInteractive.exclude_nodes_hdf
      ~LammpsInteractive.executable
      ~LammpsInteractive.executor_type
      ~LammpsInteractive.files
      ~LammpsInteractive.files_to_compress
      ~LammpsInteractive.files_to_remove
      ~LammpsInteractive.id
      ~LammpsInteractive.initial_structure
      ~LammpsInteractive.interactive_enforce_structure_reset
      ~LammpsInteractive.interactive_flush_frequency
      ~LammpsInteractive.interactive_mpi_communicator
      ~LammpsInteractive.interactive_water_bonds
      ~LammpsInteractive.interactive_write_frequency
      ~LammpsInteractive.job_id
      ~LammpsInteractive.job_info_str
      ~LammpsInteractive.job_name
      ~LammpsInteractive.job_type
      ~LammpsInteractive.logger
      ~LammpsInteractive.master_id
      ~LammpsInteractive.name
      ~LammpsInteractive.number_of_structures
      ~LammpsInteractive.parent_id
      ~LammpsInteractive.path
      ~LammpsInteractive.potential
      ~LammpsInteractive.potential_available
      ~LammpsInteractive.potential_list
      ~LammpsInteractive.potential_view
      ~LammpsInteractive.project
      ~LammpsInteractive.project_hdf5
      ~LammpsInteractive.publication
      ~LammpsInteractive.queue_id
      ~LammpsInteractive.restart_file_dict
      ~LammpsInteractive.restart_file_list
      ~LammpsInteractive.server
      ~LammpsInteractive.status
      ~LammpsInteractive.structure
      ~LammpsInteractive.units
      ~LammpsInteractive.version
      ~LammpsInteractive.working_directory