pyiron\_atomistics.atomistics.master.phonopy.PhonopyJob
=======================================================

.. currentmodule:: pyiron_atomistics.atomistics.master.phonopy

.. autoclass:: PhonopyJob
   :members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~PhonopyJob.__init__
      ~PhonopyJob.animate_structure
      ~PhonopyJob.animate_structures
      ~PhonopyJob.append
      ~PhonopyJob.calc_md
      ~PhonopyJob.calc_minimize
      ~PhonopyJob.calc_static
      ~PhonopyJob.check_if_job_exists
      ~PhonopyJob.check_setup
      ~PhonopyJob.child_hdf
      ~PhonopyJob.clear_job
      ~PhonopyJob.collect_logfiles
      ~PhonopyJob.collect_output
      ~PhonopyJob.collect_structures
      ~PhonopyJob.compress
      ~PhonopyJob.continue_with_final_structure
      ~PhonopyJob.continue_with_restart_files
      ~PhonopyJob.convergence_check
      ~PhonopyJob.copy
      ~PhonopyJob.copy_file_to_working_directory
      ~PhonopyJob.copy_template
      ~PhonopyJob.copy_to
      ~PhonopyJob.create_child_job
      ~PhonopyJob.create_job
      ~PhonopyJob.create_pipeline
      ~PhonopyJob.db_entry
      ~PhonopyJob.decompress
      ~PhonopyJob.drop_status_to_aborted
      ~PhonopyJob.dynamical_matrix_at_q
      ~PhonopyJob.first_child_name
      ~PhonopyJob.from_dict
      ~PhonopyJob.from_hdf
      ~PhonopyJob.from_hdf_args
      ~PhonopyJob.get
      ~PhonopyJob.get_band_structure
      ~PhonopyJob.get_calculate_function
      ~PhonopyJob.get_child_cores
      ~PhonopyJob.get_final_structure
      ~PhonopyJob.get_from_table
      ~PhonopyJob.get_hesse_matrix
      ~PhonopyJob.get_input_parameter_dict
      ~PhonopyJob.get_job_id
      ~PhonopyJob.get_neighbors
      ~PhonopyJob.get_neighbors_snapshots
      ~PhonopyJob.get_output_parameter_dict
      ~PhonopyJob.get_structure
      ~PhonopyJob.get_thermal_properties
      ~PhonopyJob.get_workdir_file
      ~PhonopyJob.gui
      ~PhonopyJob.inspect
      ~PhonopyJob.instantiate
      ~PhonopyJob.interactive_close
      ~PhonopyJob.interactive_fetch
      ~PhonopyJob.interactive_flush
      ~PhonopyJob.interactive_ref_job_initialize
      ~PhonopyJob.is_compressed
      ~PhonopyJob.is_finished
      ~PhonopyJob.is_master_id
      ~PhonopyJob.is_self_archived
      ~PhonopyJob.iter_jobs
      ~PhonopyJob.iter_structures
      ~PhonopyJob.job_file_name
      ~PhonopyJob.kill
      ~PhonopyJob.list_all
      ~PhonopyJob.list_childs
      ~PhonopyJob.list_files
      ~PhonopyJob.list_groups
      ~PhonopyJob.list_nodes
      ~PhonopyJob.list_structures
      ~PhonopyJob.load
      ~PhonopyJob.map
      ~PhonopyJob.move_to
      ~PhonopyJob.output_to_pandas
      ~PhonopyJob.plot_band_structure
      ~PhonopyJob.plot_dos
      ~PhonopyJob.pop
      ~PhonopyJob.refresh_job_status
      ~PhonopyJob.refresh_submission_status
      ~PhonopyJob.relocate_hdf5
      ~PhonopyJob.remove
      ~PhonopyJob.remove_and_reset_id
      ~PhonopyJob.remove_child
      ~PhonopyJob.rename
      ~PhonopyJob.reset_job_id
      ~PhonopyJob.restart
      ~PhonopyJob.run
      ~PhonopyJob.run_if_interactive
      ~PhonopyJob.run_if_interactive_non_modal
      ~PhonopyJob.run_if_modal
      ~PhonopyJob.run_if_refresh
      ~PhonopyJob.run_if_scheduler
      ~PhonopyJob.run_static
      ~PhonopyJob.run_time_to_db
      ~PhonopyJob.save
      ~PhonopyJob.save_output
      ~PhonopyJob.self_archive
      ~PhonopyJob.self_unarchive
      ~PhonopyJob.set_child_id_func
      ~PhonopyJob.set_input_to_read_only
      ~PhonopyJob.show_hdf
      ~PhonopyJob.signal_intercept
      ~PhonopyJob.store_structure
      ~PhonopyJob.suspend
      ~PhonopyJob.to_dict
      ~PhonopyJob.to_hdf
      ~PhonopyJob.to_object
      ~PhonopyJob.trajectory
      ~PhonopyJob.transfer_from_remote
      ~PhonopyJob.transform_structures
      ~PhonopyJob.update_master
      ~PhonopyJob.validate_ready_to_run
      ~PhonopyJob.view_structure
      ~PhonopyJob.write_input
      ~PhonopyJob.write_phonopy_force_constants
      ~PhonopyJob.write_traj
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~PhonopyJob.calculate_kwargs
      ~PhonopyJob.child_ids
      ~PhonopyJob.child_names
      ~PhonopyJob.child_project
      ~PhonopyJob.content
      ~PhonopyJob.database_entry
      ~PhonopyJob.dos_energies
      ~PhonopyJob.dos_total
      ~PhonopyJob.dynamical_matrix
      ~PhonopyJob.exclude_groups_hdf
      ~PhonopyJob.exclude_nodes_hdf
      ~PhonopyJob.executable
      ~PhonopyJob.executor_type
      ~PhonopyJob.files
      ~PhonopyJob.files_to_compress
      ~PhonopyJob.files_to_remove
      ~PhonopyJob.id
      ~PhonopyJob.input
      ~PhonopyJob.job_id
      ~PhonopyJob.job_info_str
      ~PhonopyJob.job_name
      ~PhonopyJob.job_object_dict
      ~PhonopyJob.job_type
      ~PhonopyJob.logger
      ~PhonopyJob.master_id
      ~PhonopyJob.name
      ~PhonopyJob.number_jobs_total
      ~PhonopyJob.number_of_structures
      ~PhonopyJob.parent_id
      ~PhonopyJob.path
      ~PhonopyJob.phonopy_pickling_disabled
      ~PhonopyJob.project
      ~PhonopyJob.project_hdf5
      ~PhonopyJob.queue_id
      ~PhonopyJob.ref_job
      ~PhonopyJob.restart_file_dict
      ~PhonopyJob.restart_file_list
      ~PhonopyJob.server
      ~PhonopyJob.status
      ~PhonopyJob.structure
      ~PhonopyJob.version
      ~PhonopyJob.working_directory