pyiron\_atomistics.atomistics.master.parallel.AtomisticParallelMaster
=====================================================================

.. currentmodule:: pyiron_atomistics.atomistics.master.parallel

.. autoclass:: AtomisticParallelMaster
   :members:
   :show-inheritance:
   :inherited-members:

   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~AtomisticParallelMaster.__init__
      ~AtomisticParallelMaster.animate_structure
      ~AtomisticParallelMaster.animate_structures
      ~AtomisticParallelMaster.append
      ~AtomisticParallelMaster.calc_md
      ~AtomisticParallelMaster.calc_minimize
      ~AtomisticParallelMaster.calc_static
      ~AtomisticParallelMaster.check_if_job_exists
      ~AtomisticParallelMaster.check_setup
      ~AtomisticParallelMaster.child_hdf
      ~AtomisticParallelMaster.clear_job
      ~AtomisticParallelMaster.collect_logfiles
      ~AtomisticParallelMaster.collect_output
      ~AtomisticParallelMaster.collect_structures
      ~AtomisticParallelMaster.compress
      ~AtomisticParallelMaster.continue_with_final_structure
      ~AtomisticParallelMaster.continue_with_restart_files
      ~AtomisticParallelMaster.convergence_check
      ~AtomisticParallelMaster.copy
      ~AtomisticParallelMaster.copy_file_to_working_directory
      ~AtomisticParallelMaster.copy_template
      ~AtomisticParallelMaster.copy_to
      ~AtomisticParallelMaster.create_child_job
      ~AtomisticParallelMaster.create_job
      ~AtomisticParallelMaster.create_pipeline
      ~AtomisticParallelMaster.db_entry
      ~AtomisticParallelMaster.decompress
      ~AtomisticParallelMaster.drop_status_to_aborted
      ~AtomisticParallelMaster.first_child_name
      ~AtomisticParallelMaster.from_dict
      ~AtomisticParallelMaster.from_hdf
      ~AtomisticParallelMaster.from_hdf_args
      ~AtomisticParallelMaster.get
      ~AtomisticParallelMaster.get_calculate_function
      ~AtomisticParallelMaster.get_child_cores
      ~AtomisticParallelMaster.get_final_structure
      ~AtomisticParallelMaster.get_from_table
      ~AtomisticParallelMaster.get_input_parameter_dict
      ~AtomisticParallelMaster.get_job_id
      ~AtomisticParallelMaster.get_neighbors
      ~AtomisticParallelMaster.get_neighbors_snapshots
      ~AtomisticParallelMaster.get_output_parameter_dict
      ~AtomisticParallelMaster.get_structure
      ~AtomisticParallelMaster.get_workdir_file
      ~AtomisticParallelMaster.gui
      ~AtomisticParallelMaster.inspect
      ~AtomisticParallelMaster.instantiate
      ~AtomisticParallelMaster.interactive_close
      ~AtomisticParallelMaster.interactive_fetch
      ~AtomisticParallelMaster.interactive_flush
      ~AtomisticParallelMaster.interactive_ref_job_initialize
      ~AtomisticParallelMaster.is_compressed
      ~AtomisticParallelMaster.is_finished
      ~AtomisticParallelMaster.is_master_id
      ~AtomisticParallelMaster.is_self_archived
      ~AtomisticParallelMaster.iter_jobs
      ~AtomisticParallelMaster.iter_structures
      ~AtomisticParallelMaster.job_file_name
      ~AtomisticParallelMaster.kill
      ~AtomisticParallelMaster.list_all
      ~AtomisticParallelMaster.list_childs
      ~AtomisticParallelMaster.list_files
      ~AtomisticParallelMaster.list_groups
      ~AtomisticParallelMaster.list_nodes
      ~AtomisticParallelMaster.load
      ~AtomisticParallelMaster.map
      ~AtomisticParallelMaster.move_to
      ~AtomisticParallelMaster.output_to_pandas
      ~AtomisticParallelMaster.pop
      ~AtomisticParallelMaster.refresh_job_status
      ~AtomisticParallelMaster.refresh_submission_status
      ~AtomisticParallelMaster.relocate_hdf5
      ~AtomisticParallelMaster.remove
      ~AtomisticParallelMaster.remove_and_reset_id
      ~AtomisticParallelMaster.remove_child
      ~AtomisticParallelMaster.rename
      ~AtomisticParallelMaster.reset_job_id
      ~AtomisticParallelMaster.restart
      ~AtomisticParallelMaster.run
      ~AtomisticParallelMaster.run_if_interactive
      ~AtomisticParallelMaster.run_if_interactive_non_modal
      ~AtomisticParallelMaster.run_if_modal
      ~AtomisticParallelMaster.run_if_refresh
      ~AtomisticParallelMaster.run_if_scheduler
      ~AtomisticParallelMaster.run_static
      ~AtomisticParallelMaster.run_time_to_db
      ~AtomisticParallelMaster.save
      ~AtomisticParallelMaster.save_output
      ~AtomisticParallelMaster.self_archive
      ~AtomisticParallelMaster.self_unarchive
      ~AtomisticParallelMaster.set_child_id_func
      ~AtomisticParallelMaster.set_input_to_read_only
      ~AtomisticParallelMaster.show_hdf
      ~AtomisticParallelMaster.signal_intercept
      ~AtomisticParallelMaster.store_structure
      ~AtomisticParallelMaster.suspend
      ~AtomisticParallelMaster.to_dict
      ~AtomisticParallelMaster.to_hdf
      ~AtomisticParallelMaster.to_object
      ~AtomisticParallelMaster.trajectory
      ~AtomisticParallelMaster.transfer_from_remote
      ~AtomisticParallelMaster.transform_structures
      ~AtomisticParallelMaster.update_master
      ~AtomisticParallelMaster.validate_ready_to_run
      ~AtomisticParallelMaster.view_structure
      ~AtomisticParallelMaster.write_input
      ~AtomisticParallelMaster.write_traj
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~AtomisticParallelMaster.calculate_kwargs
      ~AtomisticParallelMaster.child_ids
      ~AtomisticParallelMaster.child_names
      ~AtomisticParallelMaster.child_project
      ~AtomisticParallelMaster.content
      ~AtomisticParallelMaster.database_entry
      ~AtomisticParallelMaster.exclude_groups_hdf
      ~AtomisticParallelMaster.exclude_nodes_hdf
      ~AtomisticParallelMaster.executable
      ~AtomisticParallelMaster.executor_type
      ~AtomisticParallelMaster.files
      ~AtomisticParallelMaster.files_to_compress
      ~AtomisticParallelMaster.files_to_remove
      ~AtomisticParallelMaster.id
      ~AtomisticParallelMaster.input
      ~AtomisticParallelMaster.job_id
      ~AtomisticParallelMaster.job_info_str
      ~AtomisticParallelMaster.job_name
      ~AtomisticParallelMaster.job_object_dict
      ~AtomisticParallelMaster.job_type
      ~AtomisticParallelMaster.logger
      ~AtomisticParallelMaster.master_id
      ~AtomisticParallelMaster.name
      ~AtomisticParallelMaster.number_jobs_total
      ~AtomisticParallelMaster.number_of_structures
      ~AtomisticParallelMaster.parent_id
      ~AtomisticParallelMaster.path
      ~AtomisticParallelMaster.project
      ~AtomisticParallelMaster.project_hdf5
      ~AtomisticParallelMaster.queue_id
      ~AtomisticParallelMaster.ref_job
      ~AtomisticParallelMaster.restart_file_dict
      ~AtomisticParallelMaster.restart_file_list
      ~AtomisticParallelMaster.server
      ~AtomisticParallelMaster.status
      ~AtomisticParallelMaster.structure
      ~AtomisticParallelMaster.version
      ~AtomisticParallelMaster.working_directory